Bioinformatics For Biologists

• Niv Sabath
• Nicholas Price

• Undergraduate Students
• Graduate Students

Final Project:

• Description
• Example Paper 1
• Example Paper 2
• Student Presentations 10/21
• Student Presentations 10/28

Assignments:

1. Assignment 1
2. Assignment 2
3. Assignment 3
4. Assignment 4
5. Assignment 5
6. Assignment 6
7. Assignment 7
8. Assignment 8
9. Assignment 9
10. Assignment 10

Answers:

1. Assignment 1 Answers
2. Assignment 2 Answers
3. Assignment 3 Answers
4. Assignment 4 Answers
5. Assignment 5 Answers
6. Assignment 6 Answers

Presentations:

Class 1

• Administration
• Introduction to Bioinformatics
• Final Project

Class 2

• Databases
• Searching the NCBI Databases

Class 3

• Pairwise Alignment
• Pairwise Alignment Practice

Class 4

• Blast & Fasta
• Blast Practice

Class 5

• Distances
• MSA Theory
• MSA Programs
• dalign_sequences.txt

Class 6

• Trees - Part I
• MEGA - Part I
• ldh_a-c.fas

Class 7

• Trees - Part II
• MEGA - Part II
• ldh_a-c.meg
• flu.fas

Class 8

• Trees - Part III
• Practice
• Crab_rRNA.meg
• cyt2.fas

Class 9

• Structure Prediction1
• Structure Prediction2
• Practice