Bioinformatics For Biologists

• Dr. Anup Som
• Inder Jalli
• Niv Sabath

Assignments:

1. Assignment 1
2. Assignment 2
3. Assignment 3
4. Assignment 4
5. Assignment 5
6. Assignment 6
7. Assignment 7
8. Assignment 8
9. Assignment 9
10. Assignment 10

Answers:

1. Assignment 1 Answers
2. Assignment 2 Answers
3. Assignment 3 Answers
4. Assignment 4 Answers
5. Assignment 5 Answers
6. Assignment 6 Answers
7. Assignment 7 Answers
8. Assignment 9 Answers
9. Assignment 10 Answers

Final Project:

• Description
• UH Graduate Student Assignments
• Introduction
• Example
• Student Presentations

Presentations:

Class 1

• Administration
• Introduction

Class 2

• Databases
• BioEdit

Class 3

• Pairwise Alignment
• Pairwise Alignment Practice

Class 4

• Blast & Fasta
• Blast Practice

Class 5

• Distances
• MSA Theory
• MSA Programs
• dalign_sequences.txt

Class 6

• Trees - Part I
• MEGA - Part I

Class 7

• Pre-Presentation
• Trees - Part II
• MEGA - Part II
• ldh_dna_aligned.meg
• Crab_rRNA.meg

Class 8

• Trees - Part III
• Bootstrapping & Consensus

Class 9

• Schedule Note
• RNA and 2D Structure Prediction
• Practice

Class 10

• 3D Structure Prediction
• Practice

Class 11

• Motifs
• 350 E. coli upstream regions

Class 12

• Microarrays and Genetic Regulatory Networks

MDL Chime

• Mac
• Windows